HL_6SV4_232

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_232 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3515

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|YQ|C|1951
6SV4|1|YQ|G|1952
6SV4|1|YQ|G|1953
6SV4|1|YQ|A|2093
6SV4|1|YQ|C|2094
6SV4|1|YQ|G|2095

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain YF

60S ribosomal protein L19-A