HL_6SV4_240

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUUUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_240 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3713

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6SV4|1|YQ|G|2440
6SV4|1|YQ|A|2441
6SV4|1|YQ|G|2442
6SV4|1|YQ|U|2504
6SV4|1|YQ|U|2505
6SV4|1|YQ|U|2506
6SV4|1|YQ|C|2507

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XC

60S ribosomal protein L36-A