HL_6SV4_241
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAUUCAUUUUC
- Length
- 12 nucleotides
- Bulged bases
- 6SV4|1|YQ|U|2538, 6SV4|1|YQ|C|2539
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|YQ|G|2534
6SV4|1|YQ|A|2535
6SV4|1|YQ|A|2536
6SV4|1|YQ|U|2537
6SV4|1|YQ|U|2538
6SV4|1|YQ|C|2539
6SV4|1|YQ|A|2540
6SV4|1|YQ|U|2541
6SV4|1|YQ|U|2542
6SV4|1|YQ|U|2543
6SV4|1|YQ|U|2544
6SV4|1|YQ|C|2545
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain 2c
- Small subunit ribosomal RNA; SSU rRNA
- Chain Qb
- 40S ribosomal protein S1-A
- Chain Sc
- 40S ribosomal protein S4-A
- Chain Wc
- 40S ribosomal protein S9-A
- Chain XA
- 60S ribosomal protein L8-A
- Chain YN
- 60S ribosomal protein L34-A
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