HL_6SV4_243

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6SV4|1|YQ|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_243 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1247

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6SV4|1|YQ|C|2616
6SV4|1|YQ|U|2617
6SV4|1|YQ|G|2618
6SV4|1|YQ|G|2619
6SV4|1|YQ|G|2620
6SV4|1|YQ|G|2621
6SV4|1|YQ|C|2622
6SV4|1|YQ|G|2623
6SV4|1|YQ|G|2624

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YD

60S ribosomal protein L10

Chain nb

Transfer RNA; tRNA