HL_6SV4_245

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_245 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2594

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6SV4|1|YQ|A|2673
6SV4|1|YQ|A|2674
6SV4|1|YQ|C|2675
6SV4|1|YQ|A|2676
6SV4|1|YQ|G|2677
6SV4|1|YQ|A|2678
6SV4|1|YQ|A|2679
6SV4|1|YQ|A|2680
6SV4|1|YQ|U|2681

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XG

60S ribosomal protein L11-A

Chain nb

Transfer RNA; tRNA