HL_6SV4_246

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_246 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1202

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6SV4|1|YQ|C|2693
6SV4|1|YQ|A|2694
6SV4|1|YQ|A|2695
6SV4|1|YQ|A|2696
6SV4|1|YQ|A|2697
6SV4|1|YQ|G|2698
6SV4|1|YQ|G|2699
6SV4|1|YQ|G|2700

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XP

60S ribosomal protein L42-A

Chain YD

60S ribosomal protein L10

Chain YJ

60S ribosomal protein L21-A