HL_6SV4_260

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_260 not in the Motif Atlas

Homologous match to HL_5TBW_071

Geometric discrepancy: 0.343

The information below is about HL_5TBW_071

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6SV4|1|YQ|C|3350
6SV4|1|YQ|U|3351
6SV4|1|YQ|U|3352
6SV4|1|YQ|G|3353

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A