HL_6SV4_266

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6SV4|1|YS|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_266 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.2092

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6SV4|1|YS|G|124
6SV4|1|YS|U|125
6SV4|1|YS|A|126
6SV4|1|YS|U|127
6SV4|1|YS|U|128
6SV4|1|YS|C|129

Current chains

Chain YS

5.8S rRNA

Nearby chains

Chain YQ

Large subunit ribosomal RNA; LSU rRNA