HL_6SV4_267
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 6SV4|1|ZQ|A|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_267 not in the Motif Atlas
- Homologous match to HL_8C3A_001
- Geometric discrepancy: 0.1272
- The information below is about HL_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6SV4|1|ZQ|U|38
6SV4|1|ZQ|A|39
6SV4|1|ZQ|A|40
6SV4|1|ZQ|G|41
6SV4|1|ZQ|C|42
6SV4|1|ZQ|A|43
6SV4|1|ZQ|U|44
6SV4|1|ZQ|A|45
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zP
- 60S ribosomal protein L42-A
- Chain zQ
- 60S ribosomal protein L15-A
- Chain zR
- 60S ribosomal protein L28
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