HL_6SV4_276

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_276 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1067

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SV4|1|ZQ|A|357
6SV4|1|ZQ|G|358
6SV4|1|ZQ|U|359
6SV4|1|ZQ|G|360
6SV4|1|ZQ|A|361
6SV4|1|ZQ|U|362

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZE

60S ribosomal protein L4-A

Chain zF

60S ribosomal protein L37-A

Chain zL

60S ribosomal protein L39