HL_6SV4_297

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_297 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1427

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6SV4|1|ZQ|A|1462
6SV4|1|ZQ|U|1463
6SV4|1|ZQ|G|1464
6SV4|1|ZQ|A|1465
6SV4|1|ZQ|G|1466
6SV4|1|ZQ|A|1467
6SV4|1|ZQ|A|1468
6SV4|1|ZQ|C|1469
6SV4|1|ZQ|U|1470

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZC

60S ribosomal protein L31-A

Chain ZF

60S ribosomal protein L19-A

Chain zX

60S ribosomal protein L17-A