HL_6SV4_325
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUCAGUGUGA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_325 not in the Motif Atlas
- Geometric match to HL_6UGG_005
- Geometric discrepancy: 0.3897
- The information below is about HL_6UGG_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
6SV4|1|ZQ|U|2723
6SV4|1|ZQ|U|2724
6SV4|1|ZQ|U|2725
6SV4|1|ZQ|C|2726
6SV4|1|ZQ|A|2727
6SV4|1|ZQ|G|2728
6SV4|1|ZQ|U|2729
6SV4|1|ZQ|G|2730
6SV4|1|ZQ|U|2731
6SV4|1|ZQ|G|2732
6SV4|1|ZQ|A|2733
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZB
- 60S ribosomal protein L18-A
- Chain ZJ
- 60S ribosomal protein L21-A
- Chain zP
- 60S ribosomal protein L42-A
- Chain zR
- 60S ribosomal protein L28
- Chain zV
- 60S ribosomal protein L29
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