HL_6SV4_335

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

6SV4|1|ZQ|U|3195, 6SV4|1|ZQ|U|3198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_335 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2682

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZQ|C|3193
6SV4|1|ZQ|C|3194
6SV4|1|ZQ|U|3195
6SV4|1|ZQ|U|3196
6SV4|1|ZQ|G|3197
6SV4|1|ZQ|U|3198
6SV4|1|ZQ|G|3199

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain zD

60S ribosomal protein L9-A

Chain zM

60S ribosomal protein L14-A

Chain zU

60S ribosomal protein L16-A