HL_6SV4_348

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6SV4|1|mc|C|16, 6SV4|1|mc|C|17, 6SV4|1|mc|U|18|||A, 6SV4|1|mc|G|19, 6SV4|1|mc|G|20, 6SV4|1|mc|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_348 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.2317

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6SV4|1|mc|C|13
6SV4|1|mc|A|14
6SV4|1|mc|G|15
6SV4|1|mc|C|16
6SV4|1|mc|C|17
6SV4|1|mc|U|18|||A
6SV4|1|mc|G|19
6SV4|1|mc|G|20
6SV4|1|mc|U|21
6SV4|1|mc|A|22
6SV4|1|mc|G|23

Current chains

Chain mc

tRNA (P/E)

Nearby chains