HL_6SV4_353
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_353 not in the Motif Atlas
- Geometric match to HL_4MGN_004
- Geometric discrepancy: 0.2175
- The information below is about HL_4MGN_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6SV4|1|n|G|53
6SV4|1|n|U|54
6SV4|1|n|U|55
6SV4|1|n|C|56
6SV4|1|n|A|57
6SV4|1|n|A|58
6SV4|1|n|G|59
6SV4|1|n|U|60
6SV4|1|n|C|61
Current chains
- Chain n
- tRNA (P/P)
Nearby chains
- Chain AG
- 60S ribosomal protein L11-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: