HL_6SV4_357

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6SV4|1|nc|U|16, 6SV4|1|nc|C|17, 6SV4|1|nc|G|18, 6SV4|1|nc|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_357 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3332

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6SV4|1|nc|C|13
6SV4|1|nc|A|14
6SV4|1|nc|G|15
6SV4|1|nc|U|16
6SV4|1|nc|C|17
6SV4|1|nc|G|18
6SV4|1|nc|G|19
6SV4|1|nc|U|20
6SV4|1|nc|A|21
6SV4|1|nc|G|22

Current chains

Chain nc

tRNA (A/P)

Nearby chains

Chain Ec

40S ribosomal protein S15

Chain ZQ

Large subunit ribosomal RNA; LSU rRNA

Chain zG

60S ribosomal protein L11-A