HL_6SV4_361

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUGAACGCCUCUAAGU

Length

17 nucleotides

Bulged bases

6SV4|1|YQ|G|3116, 6SV4|1|YQ|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_361 not in the Motif Atlas

Geometric match to HL_7A0S_074

Geometric discrepancy: 0.225

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6SV4|1|YQ|G|3109
6SV4|1|YQ|C|3110
6SV4|1|YQ|U|3111
6SV4|1|YQ|G|3112
6SV4|1|YQ|A|3113
6SV4|1|YQ|A|3114
6SV4|1|YQ|C|3115
6SV4|1|YQ|G|3116
6SV4|1|YQ|C|3117
6SV4|1|YQ|C|3118
6SV4|1|YQ|U|3119
6SV4|1|YQ|C|3120
6SV4|1|YQ|U|3121
6SV4|1|YQ|A|3122
6SV4|1|YQ|A|3123
6SV4|1|YQ|G|3124
6SV4|1|YQ|U|3125

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XD

60S ribosomal protein L9-A

Chain XO

Ubiquitin-60S ribosomal protein L40

Chain XU

60S ribosomal protein L16-A