HL_6SWA_004

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_004 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2849

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SWA|1|q|C|131
6SWA|1|q|G|132
6SWA|1|q|C|133
6SWA|1|q|G|134
6SWA|1|q|G|135
6SWA|1|q|G|136
6SWA|1|q|G|137

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain M

60S ribosomal protein L15

Chain f

60S ribosomal protein L35

Chain h

60S ribosomal protein L37