HL_6SWA_007
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 6SWA|1|q|A|289, 6SWA|1|q|A|290
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_007 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.166
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6SWA|1|q|C|283
6SWA|1|q|U|284
6SWA|1|q|U|285
6SWA|1|q|G|286
6SWA|1|q|G|287
6SWA|1|q|G|288
6SWA|1|q|A|289
6SWA|1|q|A|290
6SWA|1|q|U|291
6SWA|1|q|G|292
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain K
- 60S ribosomal protein L13
- Chain M
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L27a
- Chain m
- MCG115063, isoform CRA_a
Coloring options: