HL_6SWA_014

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

6SWA|1|q|U|1162, 6SWA|1|q|C|1163, 6SWA|1|q|C|1164

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_014 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3515

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6SWA|1|q|G|1161
6SWA|1|q|U|1162
6SWA|1|q|C|1163
6SWA|1|q|C|1164
6SWA|1|q|C|1165
6SWA|1|q|C|1166

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10

Chain s

5S ribosomal RNA; 5S rRNA