HL_6SWA_016
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6SWA|1|q|C|1308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_016 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.151
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6SWA|1|q|U|1300
6SWA|1|q|C|1301
6SWA|1|q|U|1302
6SWA|1|q|U|1303
6SWA|1|q|G|1304
6SWA|1|q|A|1305
6SWA|1|q|A|1306
6SWA|1|q|A|1307
6SWA|1|q|C|1308
6SWA|1|q|A|1309
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain Y
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L32
Coloring options: