HL_6SWA_024
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 6SWA|1|q|A|1612, 6SWA|1|q|G|1615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_024 not in the Motif Atlas
- Homologous match to HL_5TBW_021
- Geometric discrepancy: 0.1513
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6SWA|1|q|G|1609
6SWA|1|q|C|1610
6SWA|1|q|G|1611
6SWA|1|q|A|1612
6SWA|1|q|A|1613
6SWA|1|q|A|1614
6SWA|1|q|G|1615
6SWA|1|q|A|1616
6SWA|1|q|C|1617
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain M
- 60S ribosomal protein L15
- Chain h
- 60S ribosomal protein L37
Coloring options: