HL_6SWA_029
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_029 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.1996
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6SWA|1|q|G|1867
6SWA|1|q|G|1868
6SWA|1|q|A|1869
6SWA|1|q|U|1870
6SWA|1|q|G|1871
6SWA|1|q|A|1872
6SWA|1|q|A|1873
6SWA|1|q|C|1874
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain F
- 60S ribosomal protein L7
- Chain c
- 60S ribosomal protein L32
- Chain d
- 60S ribosomal protein L35a
- Chain s
- 5S ribosomal RNA; 5S rRNA
Coloring options: