HL_6SWA_035

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6SWA|1|q|G|2400, 6SWA|1|q|U|2404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_035 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.19

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6SWA|1|q|A|2399
6SWA|1|q|G|2400
6SWA|1|q|C|2401
6SWA|1|q|A|2402
6SWA|1|q|G|2403
6SWA|1|q|U|2404
6SWA|1|q|U|2405

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain O

60S ribosomal protein L17

Chain j

60S ribosomal protein L39

Chain o

60S ribosomal protein L19