HL_6SWA_056

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCGGCC

Length

8 nucleotides

Bulged bases

6SWA|1|q|C|4107, 6SWA|1|q|G|4108

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_056 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3318

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6SWA|1|q|G|4104
6SWA|1|q|C|4105
6SWA|1|q|C|4106
6SWA|1|q|C|4107
6SWA|1|q|G|4108
6SWA|1|q|G|4109
6SWA|1|q|C|4110
6SWA|1|q|C|4111

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain X

60S ribosomal protein L27