HL_6SWA_064

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6SWA|1|q|U|4381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_064 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1704

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SWA|1|q|C|4379
6SWA|1|q|G|4380
6SWA|1|q|U|4381
6SWA|1|q|U|4382
6SWA|1|q|C|4383
6SWA|1|q|A|4384
6SWA|1|q|U|4385
6SWA|1|q|A|4386
6SWA|1|q|G|4387

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain I

60S ribosomal protein L10

Chain k

Ubiquitin-60S ribosomal protein L40