HL_6SWA_069

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_069 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1814

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6SWA|1|q|U|4608
6SWA|1|q|G|4609
6SWA|1|q|A|4610
6SWA|1|q|G|4611
6SWA|1|q|G|4612
6SWA|1|q|A|4613

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain S

60S ribosomal protein L22

Chain b

60S ribosomal protein L31

Chain o

60S ribosomal protein L19