HL_6SWA_072

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6SWA|1|q|A|4868, 6SWA|1|q|A|4869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_072 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3355

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SWA|1|q|G|4865
6SWA|1|q|G|4866
6SWA|1|q|A|4867
6SWA|1|q|A|4868
6SWA|1|q|A|4869
6SWA|1|q|G|4870
6SWA|1|q|G|4871
6SWA|1|q|C|4872

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain N

60S ribosomal protein L13a