HL_6SWA_076
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6SWA|1|r|A|84, 6SWA|1|r|U|85, 6SWA|1|r|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_076 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4931
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SWA|1|r|G|68
6SWA|1|r|U|69
6SWA|1|r|G|70
6SWA|1|r|A|71
6SWA|1|r|A|72
6SWA|1|r|U|73
6SWA|1|r|U|74
6SWA|1|r|G|75
6SWA|1|r|C|76
6SWA|1|r|A|77
6SWA|1|r|G|78
6SWA|1|r|G|79
6SWA|1|r|A|80
6SWA|1|r|C|81
6SWA|1|r|A|82
6SWA|1|r|C|83
6SWA|1|r|A|84
6SWA|1|r|U|85
6SWA|1|r|U|86
6SWA|1|r|G|87
6SWA|1|r|A|88
6SWA|1|r|U|89
6SWA|1|r|C|90
Current chains
- Chain r
- 5.8S ribosomal RNA (157-MER)
Nearby chains
- Chain W
- 60S ribosomal protein L26
- Chain f
- 60S ribosomal protein L35
- Chain h
- 60S ribosomal protein L37
- Chain j
- 60S ribosomal protein L39
- Chain q
- Large subunit ribosomal RNA; LSU rRNA
- Chain t
- Proliferation-associated protein 2G4
Coloring options: