HL_6SWA_078
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGUUCCUCCC
- Length
- 11 nucleotides
- Bulged bases
- 6SWA|1|r|U|123, 6SWA|1|r|U|124, 6SWA|1|r|C|128
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_078 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1738
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6SWA|1|r|G|120
6SWA|1|r|G|121
6SWA|1|r|G|122
6SWA|1|r|U|123
6SWA|1|r|U|124
6SWA|1|r|C|125
6SWA|1|r|C|126
6SWA|1|r|U|127
6SWA|1|r|C|128
6SWA|1|r|C|129
6SWA|1|r|C|130
Current chains
- Chain r
- 5.8S ribosomal RNA (157-MER)
Nearby chains
- Chain V
- 60S ribosomal protein L23a
- Chain q
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: