HL_6SWA_080

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_080 not in the Motif Atlas

Homologous match to HL_5TBW_186

Geometric discrepancy: 0.1292

The information below is about HL_5TBW_186

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SWA|1|s|G|86
6SWA|1|s|G|87
6SWA|1|s|A|88
6SWA|1|s|G|89
6SWA|1|s|A|90
6SWA|1|s|C|91

Current chains

Chain s

PREDICTED: Mus musculus 5S ribosomal RNA (LOC115487073), rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain Q

60S ribosomal protein L18a

Chain q

Large subunit ribosomal RNA; LSU rRNA