HL_6SWA_081

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCUUGAAACAC

Length

12 nucleotides

Bulged bases

6SWA|1|q|C|1308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_081 not in the Motif Atlas

Geometric match to HL_4TUE_218

Geometric discrepancy: 0.3669

The information below is about HL_4TUE_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SWA|1|q|G|1299
6SWA|1|q|U|1300
6SWA|1|q|C|1301
6SWA|1|q|U|1302
6SWA|1|q|U|1303
6SWA|1|q|G|1304
6SWA|1|q|A|1305
6SWA|1|q|A|1306
6SWA|1|q|A|1307
6SWA|1|q|C|1308
6SWA|1|q|A|1309
6SWA|1|q|C|1310

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain Y

60S ribosomal protein L27a

Chain c

60S ribosomal protein L32