HL_6SWA_085

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6SWA|1|q|A|4176, 6SWA|1|q|C|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_085 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1317

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6SWA|1|q|U|4172
6SWA|1|q|C|4173
6SWA|1|q|A|4174
6SWA|1|q|A|4175
6SWA|1|q|A|4176
6SWA|1|q|C|4177
6SWA|1|q|G|4178
6SWA|1|q|G|4179
6SWA|1|q|U|4180
6SWA|1|q|A|4181
6SWA|1|q|A|4182
6SWA|1|q|C|4183
6SWA|1|q|G|4184

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain I

60S ribosomal protein L10

Chain R

60S ribosomal protein L21

Chain Z

60S ribosomal protein L29