HL_6SWC_032
3D structure
- PDB id
- 6SWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 6SWC|1|4|C|16, 6SWC|1|4|C|17, 6SWC|1|4|U|17|||A, 6SWC|1|4|G|18, 6SWC|1|4|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWC_032 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.3746
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWC|1|4|C|13
6SWC|1|4|A|14
6SWC|1|4|G|15
6SWC|1|4|C|16
6SWC|1|4|C|17
6SWC|1|4|U|17|||A
6SWC|1|4|G|18
6SWC|1|4|G|19
6SWC|1|4|H2U|20
6SWC|1|4|A|21
6SWC|1|4|G|22
Current chains
- Chain 4
- initiator Met-tRNA fMet from E. coli (A1U72 variant)
Nearby chains
- Chain 9
- Translation initiation factor 2 subunit alpha
Coloring options: