RNA 3D Hub //

6SWC Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6SWC_0011/2/19:29No text annotation
HL_6SWC_0021/2/84:89No text annotation
HL_6SWC_0031/2/155:160No text annotation
HL_6SWC_0401/2/187:199No text annotation
HL_6SWC_0041/2/190:197No text annotation
HL_6SWC_0051/2/218:223No text annotation
HL_6SWC_0061/2/268:276No text annotation
HL_6SWC_0071/2/305:310No text annotation
HL_6SWC_0081/2/329:342No text annotation
HL_6SWC_0091/2/351:356No text annotation
HL_6SWC_0101/2/388:393No text annotation
HL_6SWC_0111/2/422:426No text annotation
HL_6SWC_0121/2/444:452No text annotation
HL_6SWC_0131/2/488:493No text annotation
HL_6SWC_0141/2/583:589No text annotation
HL_6SWC_0151/2/656:665No text annotation
HL_6SWC_0161/2/693:698No text annotation
HL_6SWC_0171/2/753:763No text annotation
HL_6SWC_0181/2/809:815No text annotation
HL_6SWC_0191/2/833:838No text annotation
HL_6SWC_0371/2/868:873No text annotation
HL_6SWC_0211/2/935:944No text annotation
HL_6SWC_0221/2/985:991No text annotation
HL_6SWC_0381/2/1041:1046No text annotation
HL_6SWC_0241/2/1054:1061No text annotation
HL_6SWC_0251/2/1104:1109No text annotation
HL_6SWC_0261/2/1139:1145No text annotation
HL_6SWC_0391/2/1239:1244No text annotation
HL_6SWC_0281/2/1288:1297No text annotation
HL_6SWC_0291/2/1331:1339No text annotation
HL_6SWC_0301/2/1419:1424No text annotation
HL_6SWC_0311/2/1484:1489No text annotation
HL_6SWC_0321/4/13:22No text annotation
homologous
HL_4YYE_001
NA
HL_6SWC_0331/4/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_06059.3
HL_6SWC_0341/4/53:61T-loop with 2 stacked bulged bases
homologous
HL_1H4S_003
HL_28252.4

Problematic loops

#loop idProblemSequence
HL_6SWC_035No text annotation
HL_6SWC_036No text annotation
HL_6SWC_020No text annotation
HL_6SWC_023No text annotation
HL_6SWC_027No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6SWC_0021/2/54:60,
1/2/368:370		No text annotation
IL_6SWC_0031/2/62:64,
1/2/365:366		No text annotation
IL_6SWC_0041/2/71:74,
1/2/99:100		No text annotation
IL_6SWC_0051/2/75:77,
1/2/96:98		No text annotation
IL_6SWC_0061/2/125:128,
1/2/240:241		No text annotation
IL_6SWC_0071/2/129:133,
1/2/236:239		No text annotation
IL_6SWC_0081/2/145:150,
1/2/165:171		No text annotation
IL_6SWC_0091/2/187:190,
1/2/197:199		No text annotation
IL_6SWC_0711/2/251:256,
1/2/286:293		No text annotation
IL_6SWC_0721/2/258:261,
1/2/283:284		No text annotation
IL_6SWC_0141/2/301:302,
1/2/313:317		No text annotation
IL_6SWC_0161/2/376:378,
1/2/401:402		No text annotation
IL_6SWC_0181/2/380:384,
1/2/398:399		No text annotation
IL_6SWC_0731/2/380:385,
1/2/396:399		No text annotation
IL_6SWC_0191/2/384:385,
1/2/396:398		No text annotation
IL_6SWC_0211/2/469:478,
1/2/505:507		No text annotation
IL_6SWC_0231/2/481:487,
1/2/494:502		No text annotation
IL_6SWC_0741/2/546:550,
1/2/724:728		No text annotation
IL_6SWC_0251/2/560:562,
1/2/611:612		No text annotation
IL_6SWC_0261/2/563:564,
1/2/607:610		No text annotation
IL_6SWC_0761/2/571:576,
1/2/596:600		No text annotation
IL_6SWC_0771/2/621:622,
1/2/718:721		No text annotation
IL_6SWC_0301/2/624:625,
1/2/714:716		No text annotation
IL_6SWC_0321/2/627:633,
1/2/707:712		No text annotation
IL_6SWC_0341/2/641:644,
1/2/680:683		No text annotation
IL_6SWC_0361/2/651:655,
1/2/666:673		No text annotation
IL_6SWC_0371/2/741:745,
1/2/771:772		No text annotation
IL_6SWC_0381/2/746:750,
1/2/766:770		No text annotation
IL_6SWC_0411/2/858:865,
1/2/876:881		No text annotation
IL_6SWC_0421/2/893:894,
1/2/1367:1369		No text annotation
IL_6SWC_0781/2/896:898,
1/2/1364:1365		No text annotation
IL_6SWC_0441/2/904:907,
1/2/1354:1358		No text annotation
IL_6SWC_0791/2/925:926,
1/2/1200:1202		No text annotation
IL_6SWC_0471/2/969:971,
1/2/1002:1005		No text annotation
IL_6SWC_0481/2/971:978,
1/2/998:1002		No text annotation
IL_6SWC_0491/2/980:982,
1/2/994:996		No text annotation
IL_6SWC_0501/2/1013:1015,
1/2/1182:1183		No text annotation
IL_6SWC_0511/2/1016:1021,
1/2/1178:1181		No text annotation
IL_6SWC_0801/2/1017:1023,
1/2/1173:1180		No text annotation
IL_6SWC_0521/2/1021:1023,
1/2/1173:1178		No text annotation
IL_6SWC_0531/2/1025:1026,
1/2/1169:1171		No text annotation
IL_6SWC_0851/2/1089:1093,
1/2/1118:1123		No text annotation
IL_6SWC_0821/2/1094:1097,
1/2/1116:1117		No text annotation
IL_6SWC_0561/2/1132:1135,
1/2/1149:1155		No text annotation
IL_6SWC_0581/2/1221:1227,
1/2/1258:1264		No text annotation
IL_6SWC_0591/2/1229:1232,
1/2/1251:1256		No text annotation
IL_6SWC_0831/2/1233:1236,
1/2/1247:1250		No text annotation
IL_6SWC_0611/2/1277:1282,
1/2/1303:1308		No text annotation
IL_6SWC_0621/2/1373:1375,
1/2/1470:1473		No text annotation
IL_6SWC_0841/2/1375:1378,
1/2/1466:1470		No text annotation
IL_6SWC_0641/2/1379:1381,
1/2/1463:1465		No text annotation
IL_6SWC_0651/2/1381:1383,
1/2/1460:1463		No text annotation
IL_6SWC_0661/2/1386:1388,
1/2/1455:1457		No text annotation
IL_6SWC_0861/2/1390:1395,
1/2/1448:1453		No text annotation
IL_6SWC_0681/2/1405:1408,
1/2/1435:1438		No text annotation

Problematic loops

#loop idProblemSequence
IL_6SWC_001No text annotation
IL_6SWC_070No text annotation
IL_6SWC_010No text annotation
IL_6SWC_011No text annotation
IL_6SWC_012No text annotation
IL_6SWC_013No text annotation
IL_6SWC_015No text annotation
IL_6SWC_017No text annotation
IL_6SWC_020No text annotation
IL_6SWC_022No text annotation
IL_6SWC_024No text annotation
IL_6SWC_075No text annotation
IL_6SWC_027No text annotation
IL_6SWC_028No text annotation
IL_6SWC_029No text annotation
IL_6SWC_031No text annotation
IL_6SWC_033No text annotation
IL_6SWC_035No text annotation
IL_6SWC_039No text annotation
IL_6SWC_040No text annotation
IL_6SWC_043No text annotation
IL_6SWC_045No text annotation
IL_6SWC_046No text annotation
IL_6SWC_081No text annotation
IL_6SWC_054No text annotation
IL_6SWC_055No text annotation
IL_6SWC_057No text annotation
IL_6SWC_060No text annotation
IL_6SWC_063No text annotation
IL_6SWC_067No text annotation
IL_6SWC_069No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6SWC_0121/2/53:54,
1/2/370:376,
1/2/402:404		No text annotation
J3_6SWC_0021/2/552:554,
1/2/618:621,
1/2/721:722		No text annotation
J3_6SWC_0131/2/552:554,
1/2/618:622,
1/2/718:722		No text annotation
J3_6SWC_0031/2/639:640,
1/2/684:692,
1/2/699:701		No text annotation
J3_6SWC_0141/2/793:796,
1/2/828:832,
1/2/839:845		No text annotation
J3_6SWC_0201/2/904:911,
1/2/1318:1325,
1/2/1345:1358		No text annotation
J3_6SWC_0051/2/915:918,
1/2/1209:1211,
1/2/1311:1314		No text annotation
J3_6SWC_0061/2/927:934,
1/2/945:956,
1/2/1195:1199		No text annotation
J3_6SWC_0171/2/962:966,
1/2/1008:1012,
1/2/1184:1189		No text annotation
J3_6SWC_0181/2/1028:1033,
1/2/1072:1077,
1/2/1162:1167		No text annotation
J3_6SWC_0091/2/1038:1040,
1/2/1047:1051,
1/2/1064:1067		No text annotation
J3_6SWC_0101/2/1081:1083,
1/2/1129:1132,
1/2/1155:1158		No text annotation
J3_6SWC_0191/2/1081:1083,
1/2/1129:1135,
1/2/1149:1158		No text annotation
J3_6SWC_0111/2/1211:1215,
1/2/1270:1277,
1/2/1308:1311		No text annotation
J4_6SWC_0011/2/111:119,
1/2/247:249,
1/2/295:298,
1/2/320:321		No text annotation
J4_6SWC_0021/2/139:141,
1/2/175:179,
1/2/207:213,
1/2/228:230		No text annotation
J4_6SWC_0031/2/535:543,
1/2/731:735,
1/2/778:788,
1/2/850:852		No text annotation
J4_6SWC_0041/4/7:10,
1/4/25:27,
1/4/43:49,
1/4/65:66		No text annotation
homologous
J4_7VNV_001
J4_70449.25
J5_6SWC_0031/2/42:45,
1/2/412:415,
1/2/433:438,
1/2/458:465,
1/2/511:514		No text annotation
J5_6SWC_0041/2/66:69,
1/2/102:109,
1/2/323:325,
1/2/346:348,
1/2/359:363		No text annotation

Problematic loops

#loop idProblemSequence
J3_6SWC_001No text annotation
J3_6SWC_004No text annotation
J3_6SWC_015No text annotation
J3_6SWC_016No text annotation
J3_6SWC_007No text annotation
J3_6SWC_008No text annotation
J5_6SWC_001No text annotation
J5_6SWC_002No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.1003 s