HL_6SXO_002

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SXO_002 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.2024

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6SXO|1|L5|A|2376
6SXO|1|L5|C|2377
6SXO|1|L5|G|2378
6SXO|1|L5|A|2379
6SXO|1|L5|G|2380
6SXO|1|L5|A|2381
6SXO|1|L5|A|2382
6SXO|1|L5|C|2383
6SXO|1|L5|U|2384

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains

Chain LR

60S ribosomal protein L19