6SXO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6SXO_001 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6SXO_002 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6SXO_003 | 1/L5/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6SXO_004 | 1/L5/2704:2712 | No text annotation | geometric HL_6D12_002 HL_89167.2 | |
| HL_6SXO_005 | 1/L8/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_6SXO_006 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6SXO_001 | 1/L5/387:390, 1/L5/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6SXO_002 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6SXO_013 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6SXO_003 | No text annotation | ||
| IL_6SXO_004 | No text annotation | ||
| IL_6SXO_014 | No text annotation | ||
| IL_6SXO_005 | No text annotation | ||
| IL_6SXO_006 | Tandem non-canonical cWW pairs | ||
| IL_6SXO_015 | No text annotation | ||
| IL_6SXO_007 | No text annotation | ||
| IL_6SXO_008 | No text annotation | ||
| IL_6SXO_009 | Isolated non-canonical cWW pair | ||
| IL_6SXO_010 | No text annotation | ||
| IL_6SXO_011 | No text annotation | ||
| IL_6SXO_012 | Isolated non-canonical cWW pair | ||
| IL_6SXO_016 | Single bulged C |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6SXO_002 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8C3A_060 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6SXO_001 | No text annotation |
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