HL_6SXO_003

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6SXO|1|L5|U|2530, 6SXO|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SXO_003 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1382

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SXO|1|L5|G|2523
6SXO|1|L5|U|2524
6SXO|1|L5|U|2525
6SXO|1|L5|C|2526
6SXO|1|L5|A|2527
6SXO|1|L5|G|2528
6SXO|1|L5|A|2529
6SXO|1|L5|U|2530
6SXO|1|L5|C|2531
6SXO|1|L5|C|2532

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains

Chain A

Proliferation-associated protein 2G4

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a