3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CUUAGG
Length
6 nucleotides
Bulged bases
6SZS|1|A|U|546
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_016 not in the Motif Atlas
Geometric match to HL_4U7U_001
Geometric discrepancy: 0.1893
The information below is about HL_4U7U_001
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

6SZS|1|A|C|544
6SZS|1|A|U|545
6SZS|1|A|U|546
6SZS|1|A|A|547
6SZS|1|A|G|548
6SZS|1|A|G|549

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain R
50S ribosomal protein L21

Coloring options:


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