HL_6SZS_028

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

6SZS|1|A|A|1067, 6SZS|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SZS_028 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3984

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SZS|1|A|U|1065
6SZS|1|A|U|1066
6SZS|1|A|A|1067
6SZS|1|A|G|1068
6SZS|1|A|A|1069
6SZS|1|A|A|1070
6SZS|1|A|G|1071
6SZS|1|A|C|1072
6SZS|1|A|A|1073

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain z

Peptide chain release factor 2