HL_6SZS_036

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6SZS|1|A|A|1453, 6SZS|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SZS_036 not in the Motif Atlas

Geometric match to HL_6MSF_001

Geometric discrepancy: 0.1267

The information below is about HL_6MSF_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6SZS|1|A|C|1451
6SZS|1|A|G|1452
6SZS|1|A|A|1453
6SZS|1|A|C|1454
6SZS|1|A|G|1455
6SZS|1|A|G|1456
6SZS|1|A|U|1457
6SZS|1|A|U|1458
6SZS|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17