3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
6SZS|1|A|A|2030, 6SZS|1|A|A|2031, 6SZS|1|A|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_050 not in the Motif Atlas
Homologous match to HL_4WF9_047
Geometric discrepancy: 0.1191
The information below is about HL_4WF9_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_78372.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
10

Unit IDs

6SZS|1|A|G|2027
6SZS|1|A|U|2028
6SZS|1|A|G|2029
6SZS|1|A|A|2030
6SZS|1|A|A|2031
6SZS|1|A|G|2032
6SZS|1|A|A|2033
6SZS|1|A|U|2034
6SZS|1|A|G|2035
6SZS|1|A|C|2036

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain R
50S ribosomal protein L21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1077 s