HL_6SZS_053

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6SZS|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SZS_053 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0901

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6SZS|1|A|C|2248
6SZS|1|A|U|2249
6SZS|1|A|G|2250
6SZS|1|A|G|2251
6SZS|1|A|G|2252
6SZS|1|A|G|2253
6SZS|1|A|C|2254
6SZS|1|A|G|2255
6SZS|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27

Chain x

Transfer RNA; tRNA