HL_6SZS_054

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6SZS|1|A|A|2268, 6SZS|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SZS_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0778

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6SZS|1|A|C|2264
6SZS|1|A|U|2265
6SZS|1|A|A|2266
6SZS|1|A|A|2267
6SZS|1|A|A|2268
6SZS|1|A|G|2269
6SZS|1|A|A|2270
6SZS|1|A|G|2271
6SZS|1|A|U|2272
6SZS|1|A|A|2273
6SZS|1|A|A|2274
6SZS|1|A|C|2275
6SZS|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27