HL_6SZS_079

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SZS_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0856

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6SZS|1|a|A|320
6SZS|1|a|A|321
6SZS|1|a|C|322
6SZS|1|a|U|323
6SZS|1|a|G|324
6SZS|1|a|A|325
6SZS|1|a|G|326
6SZS|1|a|A|327
6SZS|1|a|C|328
6SZS|1|a|A|329
6SZS|1|a|C|330
6SZS|1|a|G|331
6SZS|1|a|G|332
6SZS|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20