HL_6SZS_089

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6SZS|1|a|C|841, 6SZS|1|a|U|842, 6SZS|1|a|U|843, 6SZS|1|a|G|844, 6SZS|1|a|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SZS_089 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2409

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6SZS|1|a|C|840
6SZS|1|a|C|841
6SZS|1|a|U|842
6SZS|1|a|U|843
6SZS|1|a|G|844
6SZS|1|a|A|845
6SZS|1|a|G|846

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain r

30S ribosomal protein S18