3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CCUUGAG
Length
7 nucleotides
Bulged bases
6SZS|1|a|C|841, 6SZS|1|a|U|842, 6SZS|1|a|U|843, 6SZS|1|a|G|844, 6SZS|1|a|A|845
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_089 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.2409
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.2
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

6SZS|1|a|C|840
6SZS|1|a|C|841
6SZS|1|a|U|842
6SZS|1|a|U|843
6SZS|1|a|G|844
6SZS|1|a|A|845
6SZS|1|a|G|846

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain r
30S ribosomal protein S18

Coloring options:


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