3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GUUCGGGAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_104 not in the Motif Atlas
Homologous match to HL_6UFM_002
Geometric discrepancy: 0.1092
The information below is about HL_6UFM_002
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

6SZS|1|x|G|31
6SZS|1|x|U|32
6SZS|1|x|U|33
6SZS|1|x|C|34
6SZS|1|x|G|35
6SZS|1|x|G|36
6SZS|1|x|G|37
6SZS|1|x|A|38
6SZS|1|x|C|39

Current chains

Chain x
P-site tRNA-Pro(CGG)

Nearby chains

Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain i
30S ribosomal protein S9
Chain v
mRNA
Chain z
Peptide chain release factor 2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0683 s