HL_6SZS_104
3D structure
- PDB id
- 6SZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GUUCGGGAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SZS_104 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.1092
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
6SZS|1|x|G|31
6SZS|1|x|U|32
6SZS|1|x|U|33
6SZS|1|x|C|34
6SZS|1|x|G|35
6SZS|1|x|G|36
6SZS|1|x|G|37
6SZS|1|x|A|38
6SZS|1|x|C|39
Current chains
- Chain x
- P-site tRNA-Pro(CGG)
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
- Chain v
- mRNA
- Chain z
- Peptide chain release factor 2
Coloring options: