HL_6T4Q_011

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6T4Q|1|C1|U|133, 6T4Q|1|C1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_011 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.0565

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6T4Q|1|C1|C|132
6T4Q|1|C1|U|133
6T4Q|1|C1|U|134
6T4Q|1|C1|C|135
6T4Q|1|C1|G|136

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15-A

Chain Lh

60S ribosomal protein L35-A