HL_6T4Q_020

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

6T4Q|1|C1|U|545, 6T4Q|1|C1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_020 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.3053

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6T4Q|1|C1|C|543
6T4Q|1|C1|C|544
6T4Q|1|C1|U|545
6T4Q|1|C1|C|546
6T4Q|1|C1|G|547
6T4Q|1|C1|G|548

Current chains

Chain C1

25S rRNA

Nearby chains