HL_6T4Q_064

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6T4Q|1|C1|A|2637, 6T4Q|1|C1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_064 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0835

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6T4Q|1|C1|U|2633
6T4Q|1|C1|U|2634
6T4Q|1|C1|A|2635
6T4Q|1|C1|A|2636
6T4Q|1|C1|A|2637
6T4Q|1|C1|C|2638
6T4Q|1|C1|G|2639
6T4Q|1|C1|A|2640
6T4Q|1|C1|U|2641
6T4Q|1|C1|A|2642
6T4Q|1|C1|A|2643
6T4Q|1|C1|C|2644
6T4Q|1|C1|G|2645

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29